Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs12418863 | chr11:125633558 | G/A | 7.29E-5 | 178 | 16.03 | 11.6 | 4.1 | KM Plot |
| PAAD | rs12418865 | chr11:125573569 | C/T | 0.000112 | 177 | 16.08 | 14.18 | 5.03 | KM Plot |
| PAAD | rs12421710 | chr11:125721971 | C/T | 0.000114 | 175 | 15.87 | 12.2 | 4.1 | KM Plot |
| PAAD | rs12426783 | chr12:104754518 | C/T | 1.2E-12 | 176 | 15.55 | 15.57 | 1.37 | KM Plot |
| PAAD | rs12441951 | chr15:93747785 | G/A | 7.57E-5 | 173 | 15.13 | 17.4 | 4.77 | KM Plot |
| PAAD | rs12459167 | chr19:33442884 | A/G | 4.22E-5 | 178 | 15.48 | 15.62 | 4.83 | KM Plot |
| PAAD | rs12465641 | chr2:74337715 | A/G | 1.18E-6 | 178 | 2.68 | 15.53 | 15.67 | KM Plot |
| PAAD | rs12478924 | chr2:38891387 | T/C | 1.69E-6 | 176 | 15.87 | 14.17 | 3.43 | KM Plot |
| PAAD | rs12531180 | chr7:51540652 | A/G | 0 | 178 | 15.77 | 13.1 | 1.03 | KM Plot |
| PAAD | rs12535070 | chr7:103009009 | C/T | 1.96E-10 | 171 | 16.6 | 12.7 | 4.1 | KM Plot |
| PAAD | rs12536983 | chr7:103007599 | T/C | 1.63E-10 | 172 | 16.6 | 12.7 | 4.1 | KM Plot |
| PAAD | rs12537622 | chr7:102814895 | T/C | 7.47E-10 | 170 | 16.28 | 11.98 | 4.1 | KM Plot |
| PAAD | rs12537821 | chr7:102624395 | T/C | 6.7E-8 | 178 | 16.17 | 12.2 | 3.43 | KM Plot |
| PAAD | rs12540318 | chr7:157398102 | C/T | 5.2E-5 | 177 | 14.37 | 16.67 | 4.13 | KM Plot |
| PAAD | rs12575533 | chr11:125594258 | C/T | 5.96E-5 | 178 | 3.9 | 13.65 | 15.77 | KM Plot |